Xsurvey : web tool to query the set of homorepeats of all reference proteomes

Thumbnail Image

Files

xsurvey___web_tool_to_query_t-20251121140523283773.pdf (445.53 KB)

Date issued

2025

Authors

Editors

Journal Title

Journal ISSN

Volume Title

Publisher

Reuse License

CC-BY-4.0
Description of rights: CC-BY-4.0
Item type: Item , ZeitschriftenaufsatzAccess status: Open Access ,

Abstract

Homorepeats are low complexity regions in protein sequences composed of repetitions of one specific amino acid residue. There is currently no automatic way to compare the set of homorepeats between two or more species. Here we present Xsurvey, a web tool to query the set of homorepeats of 23,150 completely-sequenced proteomes. The polyX usage values can be easily compared visually, which simplifies the interpretation of the results.

DOI

https://doi.org/10.25358/openscience-13690

Description

Keywords

Citation

URI

https://openscience.ub.uni-mainz.de/handle/20.500.12030/13711

Published in

IEEE transactions on computational biology and bioinformatics, 22, 4, IEEE, New York, NY, 2025, https://doi.org/10.1109/TCBBIO.2025.3557503

Relationships

Collections

DFG-491381577-H

Endorsement

Review

Supplemented By

Referenced By