Please use this identifier to cite or link to this item:
http://doi.org/10.25358/openscience-7024
Authors: | Mier, Pablo Andrade, Miguel |
Title: | CABRA: cluster and annotate BLAST results algorithm |
Online publication date: | 23-May-2022 |
Year of first publication: | 2016 |
Language: | english |
Abstract: | Background Basic local alignment search tool (BLAST) searches are frequently used to look for homologous sequences and to annotate a query protein, but the increasing size of protein databases makes it difficult to review all results from a similarity search. Findings We developed a web tool called Cluster and Annotate Blast Results Algorithm (CABRA), which enables a rapid BLAST search in a variety of updated reference proteomes, and provides a new way to functionally evaluate the results by the subsequent clustering of the hits and annotation of the clusters. The tool can be accessed from the following web-resource: http://cbdm-01.zdv.uni-mainz.de/~munoz/CABRA. Conclusions Cluster and Annotate Blast Results Algorithm simplifies the analysis of the results of a BLAST search by providing an overview of the result’s annotations organized in clusters that can be iteratively modified by the user. |
DDC: | 570 Biowissenschaften 570 Life sciences |
Institution: | Johannes Gutenberg-Universität Mainz |
Department: | FB 10 Biologie |
Place: | Mainz |
ROR: | https://ror.org/023b0x485 |
DOI: | http://doi.org/10.25358/openscience-7024 |
Version: | Published version |
Publication type: | Zeitschriftenaufsatz |
License: | CC BY |
Information on rights of use: | https://creativecommons.org/licenses/by/4.0/ |
Journal: | BMC Research Notes 9 |
Pages or article number: | Art. 253 |
Publisher: | BioMed Central |
Publisher place: | London |
Issue date: | 2016 |
ISSN: | 1756-0500 |
Publisher URL: | http://dx.doi.org/10.1186/s13104-016-2062-y |
Publisher DOI: | 10.1186/s13104-016-2062-y |
Annotation: | Andrade, Miguel veröffentlicht unter: Andrade-Navarro, Miguel A. |
Appears in collections: | DFG-OA-Publizieren (2012 - 2017) |
Files in This Item:
File | Description | Size | Format | ||
---|---|---|---|---|---|
cabra__cluster_and_annotate_b-20220520131714935.pdf | 2.75 MB | Adobe PDF | View/Open |