cells Review Redox Modifications of Proteins of the Mitochondrial Fusion and Fission Machinery Christina Wolf 1,† , Víctor López del Amo 2,† , Sabine Arndt 3 , Diones Bueno 1 , Stefan Tenzer 3 , Eva-Maria Hanschmann 4 , Carsten Berndt 4 and Axel Methner 1,* 1 Institute of Molecular Medicine, University Medical Center of the Johannes-Gutenberg University Mainz, 55131 Mainz, Germany; wolf.christina90@gmail.com (C.W.); diones.bueno@gmail.com (D.B.) 2 Section of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093, USA; vlopezdelamo@ucsd.edu 3 Institute for Immunology, University Medical Center of the Johannes-Gutenberg University Mainz, 55131 Mainz, Germany; arndt@uni-mainz.de (S.A.); tenzer@uni-mainz.de (S.T.) 4 Department of Neurology, Medical Faculty, Heinrich-Heine University, 40225 Düsseldorf, Germany; eva-maria.hanschmann@med.uni-duesseldorf.de (E.-M.H.); carsten.berndt@hhu.de (C.B.) * Correspondence: axel.methner@gmail.com † These authors contributed equally.  Received: 11 February 2020; Accepted: 24 March 2020; Published: 27 March 2020  Abstract: Mitochondrial fusion and fission tailors the mitochondrial shape to changes in cellular homeostasis. Players of this process are the mitofusins, which regulate fusion of the outer mitochondrial membrane, and the fission protein DRP1. Upon specific stimuli, DRP1 translocates to the mitochondria, where it interacts with its receptors FIS1, MFF, and MID49/51. Another fission factor of clinical relevance is GDAP1. Here, we identify and discuss cysteine residues of these proteins that are conserved in phylogenetically distant organisms and which represent potential sites of posttranslational redox modifications. We reveal that worms and flies possess only a single mitofusin, which in vertebrates diverged into MFN1 and MFN2. All mitofusins contain four conserved cysteines in addition to cysteine 684 in MFN2, a site involved in mitochondrial hyperfusion. DRP1 and FIS1 are also evolutionarily conserved but only DRP1 contains four conserved cysteine residues besides cysteine 644, a specific site of nitrosylation. MFF and MID49/51 are only present in the vertebrate lineage. GDAP1 is missing in the nematode genome and contains no conserved cysteine residues. Our analysis suggests that the function of the evolutionarily oldest proteins of the mitochondrial fusion and fission machinery, the mitofusins and DRP1 but not FIS1, might be altered by redox modifications. Keywords: mitochondria; fusion; fission; redox; metabolism; thiol switch 1. Introduction The function and activity of many proteins is regulated by post-translational modifications (PTMs) of specific amino acids, including, for instance, phosphorylation of serine and tyrosine residues, ubiquitylation, and SUMOylation of lysine residues. These modifications are important for adjusting the cellular physiology to diverse challenges in order to regain homeostasis. Although cysteine is the least abundant amino acid, with 2.2% in complex eukaryotes [1], 214,000 cysteines are still encoded by the human genome [2]. Interestingly, the number of cysteines has increased throughout evolution and seems to correlate with the complexity of the organism [1]. Cysteine is one of the most commonly post-translationally modified amino acids due to the physical availability and the acid dissociation constant pKa of its thiol (R-SH). Thiols are nucleophilic and are more reactive in their thiolate state (RS-), which can be stabilized by positively charged or Cells 2020, 9, 815; doi:10.3390/cells9040815 www.mdpi.com/journal/cells Cells 2020, 9, 815 2 of 18 protonatedCelals m202i0n, 9o, 8a15c ids in their proximity [3]. In fact, cysteines can undergo at lea2s otf 1188 different physiological nonradical post-translational modifications [2] induced by reactive oxygen species (ROS), reactive nipthryosgioelnogsicpale cnioensra(dRicNalS p)o, sat-ntrdanrselaatciotnivale msoudliffuicratsiopnesc [i2e]s in(RduScSed) (bFyi greuarcetiv1e) .oxUygnedn esrpepchieys siological conditions(,R5O–S1)2, %reoacftiavlel pnriotrtoegienn cyspsetceiiens e(rReNsSid), uaend reactive sulfur species (RSS) (Figure 1). Under physiological conditions, 5–12% of all proteins cayrseteoinxei dreiszideudeisn arcee ollxsidainzeddt iins scuelelss a[n4d]. tiTsshueeso [x4i]d. ation and reduction oTfhec yosxtiediantieosn thanadt fruednuccttiioonn aosf tchyisotelinsews itthcahte fsu,nic.eti.o,nv iaas tthheiorl esvweirtcshibesl,e if.eo.r, mviaa tithoen roefvedrissibullefi de bonds or via de/gflourtmaathtioionn yofl atdiiosunl,fimdea kbeosndths eomr evsisa endtei/agluftoarthsioignnylaaltitorna, nmsdaukecst iothneman desvseanrtiioalu sfocre lsluiglnaarl processes, including ctrealnlspdruoctliiofen raatnido nv,adriioffues recenltluialatrio pnr,ogceesnsees,e xinpcrleusdsiniogn c,ealln dprmoliefetraabtioolni,s mdi.ffMereonrtieaotivoenr, , gthenioe l switches exhibit notexopnrelyssikoeny, asnidg nmiefitacbaonlicsemi. nMvoareroioveurs, tphihoyl sswioitlcohgeisc eaxlhbibuit not only key significance in various physiological but also pathological processes [5,6]. t also pathological processes [5,6]. Figure 1. Representation scheme of reversible oxidative post-translational modifications (Ox-PTMs) Figure 1. Rone pcyrestseeinnetsa. tPiorontesincsh ceomnteaionfinrge fvreeer stihbiolels ooxr itdhiaotliavtees p(roedstu-cterda npsrolatetiino)n eaxlhimbiot rdeiafictciavittiyo ntosw(aOrdxs- PTMs) on cysteines. cPerrotatieni noxsidcaonntst,a siuncihn ags frreeaectitvhei ooxlsygoernt shpieocliaest e(Hs 2(Ore2)d, ruecacetdivpe nroittreoginen) espxehciibesi t(RrNeaOc)t,i avnidty retaocwtivaer ds certain oxidants, ssuclfhura spreeciaecs t(iRvSeHo),x tyog feonrms psuelcfieensic( aHci2dO (-2S)O, rHe)a, cSt-igvluetanthitiroongyleantiosnp (eRc-iSeSsG()R, dNisOul)p,haidned-broenadcst ive sulfur species (R(SRHS-)S,),t So-nfiotrromsylsatuiolfne (n-SiNc Oa)c, iadnd( -SS-pOeHrsu),lfiSd-agtilount a(-tShSHio)n. *y, Rla-StiSoGn an(Rd -RSSS-SG a)l,tedraitsiuonlps rheipdrees-ebnot na ds (RS-S), S-nitrosyladtiivoenrse(- gSrNouOp )o,fa mnoddSif-icpaetirosnus.l fiAdll athtieosne m(-oSdSifHica).ti*o,nRs -aSffSecGt parnotdeinR Sfu-nSctaioltne raantdi oacntsivriteyp arneds eanret a diverse reversible via thioredoxins (Trx) or glutaredoxins (Grx). Under oxidative conditions, glutaredoxins group of maroed aibfilec atot iiondnusc.eA S-lglltuhtaetsheiomnyoladtiiofinc; oaxtiidoantisona ffvieac Ht 2pOr2o itse minosftu linkecltyi ofancialintadteda cbtyi vpietryoxairneddoaxirnes reversible via thiored(Porxi).n s (Trx) or glutaredoxins (Grx). Under oxidative conditions, glutaredoxins are able to induce S-glutathionylation; oxidation via H2O2 is most likely facilitated by peroxiredoxins (Prx). Hydrogen peroxide (H2O2) belongs to the group of ROS that have been studied for its important Hydrfougnecntiopn earso ax sideceon(Hd mOess)enbgeelro inng ssigtnoalt htreangsdrouuctpiono. fWRhOenS Hth2Oa2t rheaacvtse wbiethe na sfrteued pireodteifno rthiitosl, important sulfenic acid (R-SOH)2 is f2ormed (Figure 1), which is unstable and very reactive [7]. Sulfenic acid can function absea fusretchoern odximdizeesds eton gsuelrfininic s(Rig-SnOalHt2 )r aannds dsuulfcotnioicn a.ciWd (hRe-SnOH O3H2). C2yrseteaincet sowxiditahtioan fcraene apltreor tein thiol, sulfenic acpidro(teRin-S cOonHfo)rmisaftoiornm aend (trFigi guerr eun1f)o,ldwinhgi,c lheaidsinugn tsot ahbiglheear npdrovteeinr yturrenaocvteirv, eto[x7ic] .aSggurlefgeantiiocna, cid can be further oxiadnidz aeldterteods cuelllfi sniginca(liRn-gS uOp2 tHo c)eall nddeasthu [l8fo]. nic acid (R-SO3H). Cysteine oxidation can alter protein conformation aRneadcttivrieg sguelfruru snpfeoclidesi n(RgS,Sl)e aanddi nthge troespheicgthiveer thpirool tmeoindiftiucartnioonv Se-rp,etrosuxlifcidaeg (g-SrSeHg)a ctaion na,lsaon d altered alter cysteines (Figure 1). Since it was first shown that H2S is physiologically produced and RSS has cell signalian bgioulopgitcoal cfuenllctdioena itnh m[a8m].mals, there has been a steadily growing interest in this topic [9–12]. Next Reacttiov enistruicl fouxridsep (eNcOie)s a(nRdS cSa)rbaonnd mtohneoxreidsep (eCcOti)v, eHt2Sh iios lcmouondteidfi acmatoinognstS t-hpee grassuoltfiradnesm(-itSteSrHs. ) can also alter cysteHinoewsev(eFri,g huowre H12)S., oSri rnactheeri tdwowansstfirerasmt sphroodwucnts,t shuacth Has 2sSulfiisdep ahnyiosnio (lHoSg-)i,c paolllysuplfrioddesu, acned and RSS has a biolosgulifchayldfruyln rcatdiiocanl i(nHSm•-a),m acmt aasl sa, stuhlefurre shigansalb reeemnaianss tlaeragdeliyl yelgursiovwe. iInt gwains tperroepsotseidn tthhaits thtoe pic [9–12]. canonical mitochondrial [11] and heme-dependent sulfide oxidation [13] are both important sources Next to nitorfi cRSoSx. iFduert(hNerOmo)raen, ednzcyamrbe-ocnatamlyozendo txriadnesp(eCrsOulf)i,dHati2oSn iiss ccoruucniatle fdora tmheo tnarggsett tshpeecgifiacsitoyt roaf nsmitters. However,rhevoewrsibHle2 PST, Mors. rSaotmhe rredsuoltws snusgtgresat mthapt -rSoSdHu isc tnso,t sfourcmheda sthsrouulfighd ae raeancitoion (oHf fSre-e) ,thpiollsy wsiuthlfi des, and sulfhydrylRSrSa dbuict aralt(hHer Sfr•o-m), a ncut calesopahsiluicl afuttarcksi fgronmal HrSe-m waitihn aslrleardgye olxyideizlueds itvhieo.ls,I stuwcha ass pdirsoulpfiodsees,d that the canonical mgluittoatchhioonnydlartieadl o[r1 n1i]traonsydlahteedm cyes-tdeienpees,n adnden stulsfuenlific daceido x[1i4d].a Otinoen h[y1p3o]thaerseisb iso tthhati min pthoirs twanayt, sources of the reaction with excess ROS to sulfinic acid and/or RNS is hindered and the protein is hence RSS. Furthperromteoctreed, efrnozmy mpeerm-caanteanlty dzaemdatgrea nbysp ReOrsSu alsfi pdeartsiuolfnidiess ccraunc biael rfeodrutchede. tMarogreeotvsepr,e creicfiecnitt ydaotaf reversible PTMs. Somsuegrgesstu tlhtasts puegrsguelfsidt athteadt c-ySsSteHineis rensoidtufeosr cmane dbet ohxrioduizgedh tao r–eSaScOtHio, n-SoSOf f2rHe,e anthdi –oSlSsOw3Hit,h wRhSicSh but rather from a nuc leophilic attack from HS- with already oxidized thiols, such as disulfides, glutathionylated or nitrosylated cysteines, and sulfenic acid [14]. One hypothesis is that in this way, the reaction with excess ROS to sulfinic acid and/or RNS is hindered and the protein is hence protected from permanent damage by ROS as persulfides can be reduced. Moreover, recent data suggest that persulfidated cysteine residues can be oxidized to -SSOH, -SSO2H, and -SSO3H, which can be reduced because of the disulfide bridge [15]. H2S was shown to have roles in vasodilation [10], ER stress [16], and anti-apoptotic pathways [17]. For example, H2S regulates vasodilation through an increase of cyclic Cells 2020, 9, 815 3 of 18 guanosine monophosphate (cGMP), potassium (K+) increase via opening of ATP-sensitive potassium channels (KATP), and activation of endothelial nitric oxide synthase (eNOS), which also elevates cGMP levels. The cGMP degradation by phosphodiesterase 5 (PDE5) is inhibited by H2S, which leads to prolonged elevated cGMP levels [18–20]. In addition, H2S relaxes vascular smooth muscle cells [21]. Reactive nitrogen species (RNS) include nitric oxide (•NO), nitroxyl (HNO), and peroxynitrite (ONOO-). They are formed from the reaction of NO with ROS in case of ONOO- or H2S for HNO, respectively. •NO itself is produced endogenously by eNOS, inducible nitric oxide synthase (iNOS), and neuronal NOS (nNOS) from L-arginine and oxygen. The cysteine PTM caused by NO is called S-nitrosylation (R-SNO) (Figure 1). The most abundant endogenously present S-nitrosothiol is S-nitrosoglutathione (GSNO), which is the major •NO donor for proteins. It is formed by the transfer of a nitrosyl group (R-NO) from the heme of cytochrome c onto glutathione (GSH) [22]. This reaction takes place within mitochondria from which GSNO diffuses to the rest of the cell, where the –NO can be transferred to other proteins, such as the nuclear factor NF-kappa-B (NFκB), hypoxia-inducible factor 1 (HIF-1) [23], and glycerinaldehyd-3-phosphat-dehydrogenase (GAPDH) [24]. Within mitochondria, all complexes of the electron transport chain, ATP synthase, enzymes of the Krebs cycle [25,26], and β-oxidation enzymes [27] are S-nitrosylation targets. Most modified mitochondrial proteins seem to be inhibited by S-nitrosylation to restrict ROS production. However, at higher concentrations and in reaction with the superoxide radical O •-2 , •NO forms the more reactive ONOO-, leading to tyrosine nitration [28] and cellular damage [29]. GSH not only transfers NO to other proteins, it can also modify proteins itself by S-glutathionylation (R-SSG). Cysteines can spontaneously react with the glutathione disulfide (GSSG) through a nucleophilic attack of glutathione on ionized protein thiol or thiolate (Pr-S-) [30], sulfenic acid, or protein thionyl radical [31,32]. Even though S-glutathionylation has been shown to regulate protein function, for instance, through modification of transcription factors, such as the nuclear factor erythroid 2–related factor 2 (Nrf2) and NFκB [33] and mitochondrial membrane proteins [34], protein glutathionylation during oxidative distress is rather considered a protective mechanism, which is also enzymatically facilitated by glutaredoxins (see below). In general, oxidative distress describes the pathological oxidative damage of biomolecules that has been linked to various pathologies, whereas oxidative eustress describes physiological redox alterations important for the regulation of several signaling pathways and the activity of a variety of proteins [35]. For this physiological signaling function, most of the abovementioned post-translational modifications are reversible and enzymatically controlled via oxidoreductases of the thioredoxin (Trx) family (Figure 1) [36]. Oxidizing as well as reducing molecules potentially inducing post-translational modifications on their own, e.g., H2O2 or GSH, show very low reactivity with thiols. Therefore, enzymes/oxidoreductases are needed for (i) the formation and removal of these modifications and (ii) to ensure the specificity for proper signaling events [37]. Whereas Trxs are able to reduce disulfides, S-nitrosylated [38], S-persulfidated [39], and further oxidized S-persulfidated cysteine residues [15], glutaredoxins (Grxs) reduce disulfides, S-glutathionylated [40], and S-persulfidated cysteine residues [39]. Sulfenic acid cannot be reduced directly; it needs to be converted into a disulfide or a S-glutathionylation. Sulfinic and sulfonic acids are generally considered irreversible [7], although there are indications that sulfinic acid can be reversed in an ATP-dependent reaction by sulfiredoxin (Srx) [41,42]. In fact, recent data increase the number of Srx targets and indicate regulatory functions [43]. Peroxiredoxins (Prx) constitute cellular peroxidases that can reduce peroxides and transfer oxidizing equivalents to target proteins [44,45]. In addition, protein disulfide isomerases also belong to the Trx family. These enzymes are known to mediate thiol/disulfide exchange reactions, function as chaperones, and regulate protein activity [46–48]. 2. The Mitochondrial Fusion and Fission Machinery Most of the cellular reactive species are produced by mitochondria [49,50], cellular organelles with an outer (OMM) and inner (IMM) membrane that convert most of the cell’s energy to ATP by generating a proton (∆pHm) and electrical (∆ψm) gradient across the inner membrane through the Cells 2020, 9, 815 4 of 18 respiratory chain, which drives the ATP synthase. Complex I of the respiratory chain can produce large amounts of ROS under conditions, such as a high NADH/NAD+ ratio caused by inhibition or damage to complex I [51] or reverse electron transport due to a backlog of electrons during low ATP demand [52,53], cytochrome c (Cyt c) loss, or inhibition of oxygen consumption. This leads to a relatively reduced coenzyme Q (CoQ) pool and a high proton motive force ∆p [54], which then results in oxygen reduction at complex I and hence ROS production [55]. Apparently, complex I activity can also be impaired via the thiol switch of cysteine 39 of the ND3 subunit by nitric oxide, which shows a cardioprotective effect in conditions of ischemia [56]. Additionally, though still under debate and shown by in vitro conditions only, complex III of the respiratory chain has been proven as a second important ROS-producing source primarily affecting the proteins of the OMM and intermembrane space via oxidative modification, whereas the matrix proteins are rather targeted by ROS produced by complex I, indicating two separate redox-signaling pathways [57–59]. However, one mechanism of how ROS produced by the ETS can also enter the cytosol is via the voltage-dependent anion channel (VDAC), which resides in the outer mitochondrial membrane, thus allowing the diffusion of inner-mitochondrial superoxides into the cytosol [60]. Mitochondria also contain various members of the Trx family [36]. Trx2, and Grx1 (intermembrane space) and Grx2 (matrix) indicate functioning redox signaling [36,61,62]. In addition, mitochondria also contain two peroxiredoxins, i.e., peroxiredoxins 3 and 5 [36] Mitochondria can form a long tubular network, which continually undergoes fusion and fission events in a regulated process termed mitochondrial dynamics necessary to adapt to environmental changes. The overall shape of the mitochondrial tubular network is determined by the balance between fusion and fission. Mitochondrial fission events also regulate and enable mitochondrial transport throughout the cells, especially throughout the neurons’ axons, while the fusion process, in contrast, can spare mitochondria from mitophagy by allowing an exchange of biolipids and mitochondrial DNA. These mitochondrial dynamics are thus vital for cellular wellbeing (reviewed in [63]). The fusion of adjacent mitochondria can be induced by homo- or heterodimers of the GTPases mitofusin 1 and 2 (MFN1/MFN2) located at the OMM. Fusion of the IMM, in contrast, is mediated by the protein optical atrophy 1 (OPA1). Proteolytic processing of OPA1 is triggered by a loss of membrane potential and results in the induction of IMM fusion [64]. This pro-fusion mechanism seems to be controlled by cellular metabolism, as OPA1-induced fusion events are supposedly strongly linked to OXPHOS activity [64]. Fragmentation of mitochondria is primarily mediated by the cytosolic GTPase dynamin-related protein 1 (DRP1), which, after activation, translocates to the outer mitochondrial membrane, oligomerizes, and encircles the mitochondrion, thereby inducing fragmentation. Crucial for DRP1′s binding to mitochondria are other OMM proteins, including the fission 1 protein (FIS1), mitochondrial dynamics proteins of 49 and 51 kDa (MID49/51) [65], and the mitochondrial fission factor (MFF) [66]. Overexpression of the OMM protein ganglioside-induced differentiation-associated protein 1 (GDAP1), which shares homology with some glutathione-S-transferases, is closely related to mitochondrial fission, although the precise mechanism is still unclear [67–69]. We here hypothesize that the cysteine modification of proteins involved in mitochondrial dynamics enables cellular adaptation to altered physiological conditions that involve reactive cellular species, and review the relevant literature on this topic. 3. Evolutionary Conservation of Proteins Involved in Mitochondrial Dynamics Important redox modification sites have been shown to be conserved over different taxa. Hence, to identify potential sites of the aforementioned proteins, we decided to first investigate the presence of these proteins in phylogenetically distant organisms and detect evolutionarily conserved cysteines assuming that such sites are more likely to represent sites of physiologically relevant redox modifications. Wherever possible, we obtained the protein sequence of these proteins from Homo sapiens, the mouse Mus musculus, the chicken Gallus gallus, the zebrafish Danio rerio, the fruit fly Drosophila melanogaster, and the nematode Caenorhabditis elegans using the Uniprot database (www.uniprot.org) and conducted Cells 2020, 9, 815 5 of 18 assuming that such sites are more likely to represent sites of physiologically relevant redox modifications. Wherever possible, we obtained the protein sequence of these proteins from Homo sapiens, the mouse Mus musculus, the chicken Gallus gallus, the zebrafish Danio rerio, the fruit fly Cells 2020, 9, 815 5 of 18 Drosophila melanogaster, and the nematode Caenorhabditis elegans using the Uniprot database (www.uniprot.org) and conducted multiple sequence alignments with Clustal Omega m(wuwltiwp.lcelusesqtaule.onrcge).a lOigunrm aenatslywsiist hdCemluostnasltOramteedg ath(awt wCw. .eclleugsatnasl. oarngd). DO.u rmaenlaanlyogsiasstdeer mponssetrsast eodnltyh aat Csi.neglelgea mnsitaonfdusDin. m(FelZaOno1g asntedr pMoAssReFss1,o nrelyspaescitnivgelelym), iwtohfuicshin i(nF ZvOer1teabnrdatMesA dRivFe1r,gredsp ienctoiv MelyF)N, w1 hainchd iMnFvNer2t e(bFrigauterse d2iAve).r gDeRdPi1n taondM FINS 1 arned aMlsoF Nev2ol(uFtigiounraeri2lAy )c.oDnRsePr1veadn dinF aIlSl 1thaerseea olsrogaenviosmlusti o(Fniagruilrye c2oBn) swerhvieled GinDaAllPth1e isse aolrsgoa pnrisemsesn(tF iing utrhee 2fBru) iwt hfliyle bGuDt AnoPt1 iins tahlseo npermesaetnotdien gtheenofrmuiet (flFyigbuurten 2oCt )i.n Tthe nDeRmPa1t ordeecegpetnoorms Me (FFig uanred2 MC)I.DT4h9e/5D1R aPr1e,r eicne pctoonrtsraMstF,F eavnodluMtioIDna4r9i/l5y1 naerew, inancdo notrnalsyt ,perveosleunttio inna rtihlye nvewrteabnrdatoe nlilnyepargees e(Fnitgiunrteh 2eDv)e. rtebrate lineage (Figure 2D). FFiigguurree 22.. PPhhyylologgeenneetitcict rtereeseos botabitnaeindebdy bmyu mltiupllteipallieg namligennmt oefnatm oifn aomacinidos eaqciude nsceeqsufernocmesH formomo s aHpioemnso, Msapuisenmsu, sMcuulus sm, Gusaclululus sg,a Gllualsl,uDs agnailolurse,r iDo,aanniod rDerrioos, oapnhdil aDmroeslaonpohgilaas tmerelwanhoegnasptoers swibhlee.n Tphoessmibolset. aTbhuen mdaonstt iasboufonrdmasntw iseorefoursmeds wfoerrteh uesaeldig fnomr ethnet. a(lAig)nMmFeNnt2. i(sAp) rMesFeNnt2i nis apllrecsoemnpt ainre adlls cpoemciepsarwedhi lsepMecFieNs 1wwhialse nMoFt Nfo1u nwdaisn nDorto sfoopuhnilda ainn dDCroesloepgahnilsa. a(Bn)dD CR Pel1egaannds.F (IBS1) pDrResPe1n taenddo rFtIhSo1l opgrseisnenatleldco omrtphaorleodgssp ienc iaelsl. (C) GDAP1 is present in all compared species except in C elegans. (D) MFF and MID49/51 proteins were compared species. (C) GDAP1 is present in all compared species except in C elegans. (D) MFF and found in Homo sapiens, Mus musculus, and Danio rerio. MID49/51 proteins were found in Homo sapiens, Mus musculus, and Danio rerio. 4. Redox Modifications of Proteins Involved in Mitochondrial Dynamics 4. Redox Modifications of Proteins Involved in Mitochondrial Dynamics 4.1. Mitofusins 4.1. MMitFoNfu1sianns d MFN2 are OMM proteins that mediate mitochondrial fusion by forming homo- or heterModFiNm1e rasn. dT hMeyFNar2e aerxep OreMssMed pmrotsetinabs uthnadta mntelydiiantet hme intoecrhvonuds rsiyasl tfeumsi,oans bwye lfloarms iingsk hino,mhoe-a ortr, ahnedtermoduismclertsi.s Tsuhey[7 a0r,e7 1e]x. pIrtehsasesdb emeonsst uagbguensdteadnttlhy aitnM thFeN n2ermvoedusia styestoermg,a anse lwleetlel tahse irnin sgkibne, thweeaernt, manidto cmhuonscdleri atiisnsutrea [n7s0o,7r1b].e tIwt heeans bmeietonc shuogngdersiateadn tdhtaht eMEFRNw2h mil edMiaFtNes1 ofargcialnitealtlees ttehtehefurisniogn bpertwoceesns tmogiteotchheornwdirtiha OinP tAra1nast othr ebeintwnerenm memitborcahnoen[d7r2ia,7 a3n].dA tfhte rEGRT wPhhilyed MroFlyNz1a tfiaocnil,iMtatFeNs 1thaep fpuasrieont plyrolocseess ittosgaeffithneirt ywtiothi tOs cPoAu1n atetr tphaer itnbnuetrh masemgrberaatenre G[7T2P,7t3u]r. nAofvter GacTtPiv hitydwrohliylezaMtiFoNn,2 MpFroNte1i nasppstailrlernetmlya lionsaes ditism aeffrisn, imtya tkoi nitgs McoFuNnt2erapmarotr beuetff heactsi vgeretaetehre GrinTgP mtuorlneocvueler [a7c2t]iv. ity while MFN2 proteins still remain as diMmeFrNs,1 mcaokninsigs tMs FoNf 27 4a1 maonrde eMffFecNti2veo tfet7h5e7rianmg imnoleacuidles ;[7b2o].t h proteins share 82% structural similMariFtNie1s [c7o4n]saisntds coof n7t4a1in aannd NM-tFeNrm2 inoaf l 7G5T7 Pa-mdoinmoa iancifdosl;l obwoethd bpyroatecinosil esdh-acroei l8h2e%p tastdr-urcetpueratl dsiommilaairnit(iHesD [17)4a] nadndtw cootnrtaaninsm aenm Nbr-atenremdionmal aGinTsP(-TdMomDsa)inse fpoalrloawtededb ybyo nae caomiliendo-caocild h(Fepigtuadre-r3eAp,eBa)t. O nly MFN2 harbors a proline-rich domain between the TMD and the HD1 domain, which is most likely involved in protein–protein interactions [75,76]. The C-terminus of both mitofusins contains a second HR2 domain, which seems to be located in the intermembrane space (IMS) [77] (Figure 3A). Cells 2020, 9, 815 6 of 18 domain (HD1) and two transmembrane domains (TMDs) separated by one amino acid (Figure 3A,B). Only MFN2 harbors a proline-rich domain between the TMD and the HD1 domain, which is most Celllsi2k0e2l0y, 9in, 8v1o5lved in protein–protein interactions [75,76]. The C-terminus of both mitofusins contain6so af 18 second HR2 domain, which seems to be located in the intermembrane space (IMS) [77] (Figure 3A). FigFuirgeu3re. S3.c hScehmeme iel liullsutsrtartaintigngt htheer erelalatitviveep poossiittiioonn ooff ccoonnsseerrvveedd ccyysstteeinineess wwitihthinin rerceocgonginziazbalbe lperporteoitne in domdoaminasinosf otfh ethien dinicdaicteadtedp rportoetienisn.s. CCoolloorrss aarree uusseedd ttoo hhiigghhlliigghhtt pprrootteeinin ddoommaainins,s ,eveovloultuiotinoanrialryi ly concsoenrsveerdvecdy sctyesitneiense,sa, nadndc ycsytsetieninesesw witihtha ad deemmoonnssttrraatteedd ffuunnccttiioonn.. (A(A) )MMFFNN2 2hahsa sfivfiev ecocnosnesrevrevde d cysctyesinteeisneosu otuotf owf hwichhichth teheC 6C86484h ahsasa ap prervevioiouusslylyd deemmoonnssttrraatteedd rreeddooxx--iinndduuccibiblel efufunnctcitoino.n (.B()B M) MFNF1N 1 conctoanintasinfos uforucro cnosnesrevrevdedcy csytsetieniensesb buut ty yeettw witithhoouutt aannyy oobbsseerrvveedd rreeddooxx ffuunncctitoionn. .(C(C) )DDRRP1P 1popsossessesesss es four conserved cysteines, whereas a fifth not fully conserved cysteine (C644) can be redox modified. (D) FIS1 and (E) MFF do not have any conserved cysteines along their structure. (F) MID51 has six fully conserved cysteines, including C452, regulating the protein’s dimerization. (G) MID49 has two conserved cysteines (H) GDAP1 has no fully conserved cysteines. Cells 2020, 9, 815 7 of 18 As mitofusins are crucial for the mitochondrial fusion process, mitofusin turnover is a highly regulated process. Mitofusins are ubiquitinated by parkin (PARK2) [78,79] during mitochondrial quality control, where PARK2 translocates to the mitochondria to orchestrate their selective elimination through mitophagy [80]. Ubiquitination of mitofusins by E3 ligases like MGRN1 and Gp78 not only controls mitochondrial turnover via mitophagy but also affects mitochondrial morphology and mitochondria-ER-contact sites (MERCS), which constitute important intracellular signaling hubs [81–83]. By treating primary neurons with the NO-donor A-nitrosocysteine (SNOC), Barsoum et al. observed that concomitant MFN1 expression prevented NO-induced mitochondrial fragmentation and even NO-induced cell death [84]. This may emphasize the importance of mitochondrial fusion’s ability due to mitofusin expression in order to cope with nitrosative stress. The process of mitochondrial hyperfusion, a cellular stress response induced by changes in the intracellular redox state, involves both mitofusins [85]. In line, oxidized glutathione (GSSG) addition, the core cellular stress indicator, to mitochondrial preparations stimulated mitochondrial fusion by inducing disulphide bond-mediated oligomer formation of MFN1 and cysteine 684 of MFN2 [85]. This points towards a regulation of redox-regulated mitochondrial hyperfusion into the IMS. Here, cysteines trigger dimerization of the mitofusins through disulfide bonds to drive mitochondrial fusion [77]. Accordingly, work from our laboratory demonstrated that this cysteine is involved in sensing the redox environment in the IMS [86]. In addition to the abovementioned conserved cysteine 684, both MFN1 and MFN2 contain four and five highly conserved cysteines, respectively. Three are located in the GTPase domain while the fourth one is located next to the HR1 domain in both mitofusins (Figure 3A,B and complete alignment in Supplementary Materials). The role of these evolutionarily conserved cysteines located in the cytosol remains unclear with regard to their function as potential PTMs in response to changes in the redox milieu. 4.2. DRP1 DRP1 is the major player in the mitochondrial fission process. The protein consists of an N-terminal GTPase and a C-terminal GTPase effector domain (GED) separated by a helical segment of amino acids [87,88]. In humans, six DRP1 isoforms are generated by alternative splicing. Isoform 1 consists of 736 amino acids and is expressed exclusively in the brain (Figure 3C). The isoforms 2 (710 amino acids) and 3 (699 amino acids) are predominantly expressed in the testis and skeletal muscle, respectively. DRP1 isoform 4 (725 amino acids) is weakly expressed in the brain, heart, and kidney. The isoform 5 (710 amino acids) occurs predominantly in the liver, heart, and kidney, while isoform 6 (749 amino acids) is expressed in neurons [89–93]. DRP1 exists in the cytoplasm in an equilibrium between dimeric and tetrameric forms [94]. Upon stimulation, DRP1 is recruited to mitochondria and promotes fission via interaction with its receptors FIS1, MFF, and MID49/51 located at the OMM, which allows DRP1 to form ring-like oligomers that constrict and divide the mitochondria, a process accompanied by GTP hydrolysis [95–97]. The ability of DRP1 to promote mitochondrial fission can be regulated by phosphorylation, ubiquitination, and SUMOylation [98]. Most importantly in the redox context, DRP1 can be regulated by S-nitrosylation of cysteine 644 (C644; position in the human protein), which is conserved from flies to humans (Figure 3C). Cho et al. showed that an NO increase provoked by amyloid-β peptide induces DRP1 S-nitrosylation at C644, leading to subsequent DRP1 dimerization and increased GTPase activity, and resulting in more fragmented mitochondria [99]. Furthermore, postmortem brain samples from Alzheimer’s disease (AD) patients presented higher levels of S-nitrosylated DRP1 when compared to control samples or samples from patients suffering from Parkinson’s disease (PD) [99]. In contrast, Bossy et al. suggested that DRP1 S-nitrosylation does not increase its GTPase activity, and that the levels of S-nitrosylated DRP1 are not changed when comparing postmortem brain samples from control, AD, and PD patients. Instead, they suggested that NO production stimulates DRP1 activity via serine 616 (S616) phosphorylation [100]. Nakamura and Lipton counterargued that Bossy et al. used recombinant DRP1 Cells 2020, 9, 815 8 of 18 for their experiments, which was already oxidized, preventing its S-nitrosylation [101]. Additionally, it was shown that DRP1 can be trans-S-nitrosylated by cyclin-dependent kinase 5 (CDK5) in AD models [102], and that an increase in S-nitrosylated DRP1 induced by decreased S-nitrosoglutathione reductase (GSNOR) expression can occur in primary cells undergoing senescence [103]. A recent study demonstrated that the protein disulfide isomerase A1 (PDIA1) acts as a thiol reductase for DRP1. In neurodegenerative and cardiovascular diseases, PDIA1 deficiency results in increased S-nitrosylated DRP1, mitochondrial fragmentation, and endothelial senescence [104]. DRP1 phosphorylation was also associated with changes in the redox milieu. Zhou et al. showed that c-Abl-induced DRP1 phosphorylation triggers mitochondrial fragmentation upon H2O2 treatment in primary neurons [105], while Lee and Kim suggested that PDI-mediated DRP1 S-nitrosylation facilitates DRP1 S616 phosphorylation in hippocampal neurons [106]. Additionally, Tsushima et al. showed increased DRP1 S616 phosphorylation in response to lipid overload-induced oxidative stress in cardiac myocytes [107]. Besides C644, DRP1 contains four additional evolutionarily conserved cysteine residues with yet unknown functions, one at the end of the GTPase domain and three located in the middle region that connects the GTPase domain with the effector domain (Figure 3C and complete alignment in Supplementary Materials). 4.3. FIS1 FIS1 was the first protein shown to interact with DRP1 and to allow mitochondrial fission in the budding yeast Saccharomyces cerevisiae [108]. In contrast, FIS1 does not seem to be essential for mitochondrial fission in mammalian cells [109,110] and shows low tissue specificity [111]. FIS1 is a 17-kDa protein with a C-terminal OMM anchor and two cytosolic tetratricopeptide repeat (TPR) motifs (Figure 3D) [112]. A concave surface formed by the residues in the TPR motifs is believed to be the interacting region for DRP1 [113] while the N-terminal arm controls DRP1 access to the TPR motifs [114]. However, an understanding of how the position of the N-terminal arm is regulated is still lacking. Most of the reported FIS1 regulation is associated with the regulation of its protein abundance in response to cellular stress. Glutamate-challenged HT22 cells have an upregulated FIS1 (and phosphorylated DRP1) and have a more fragmented mitochondrial shape [115]. Zhang et al. reported increased FIS1 protein levels in mice treated with 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP; a precursor of the mitochondrial complex I inhibitor 1-methyl-4-phenylpyridinium (MPP+), a mouse model of PD, while overexpression of DJ-1 (a protein mutated in familiar PD) repressed FIS1 upregulation via RING-finger protein-5-mediated FIS1 ubiquitination and degradation [116]. In line with this, 6-hydroxydopamine (6-OHDA; another PD model) increased FIS1 (and DRP1) protein levels in PC12 cells [117], while H2O2 induced an increase in FIS1 protein levels in SH-SY5Y cells [118]. In summary, although FIS1 does not seem to be directly regulated via redox mechanisms, it seems to respond to the redox milieu via upregulation or decreased degradation. In line with this, FIS1 contains only a single cysteine, which is also not evolutionarily conserved (Figure 3D and complete alignment in Supplementary Materials). We therefore believe that a direct redox-mediated regulation of FIS1 by cysteine modification is unlikely. 4.4. MFF The protein mitochondrial fission factor (MFF) was first described in a Drosophila cell line screen for proteins triggering mitochondrial morphology alterations. MFF knockdown caused elongated mitochondria similar to what was observed for DRP1 and FIS1 knockdown [119]. MFF contains 342 amino acids and is one of three DRP1 receptors located in the OMM facing the cytosol [119]. This protein contains two consecutive cytosolic motifs that are necessary for DRP1 recruitment [109] and a third motif of unknown function. MFF dimerization depends on a well-preserved coiled-coil domain, Cells 2020, 9, 815 9 of 18 which precedes the C-terminal transmembrane (TM) domain (Figure 3E) [119]. MFF is broadly present in different human tissues, such as the heart, kidney, liver, brain, muscle, and stomach [119]. A PTM predictive model identified multiple serine and threonine phosphorylation sites that are potential targets for post-translational modification [120]. Mutating MFF serine 155 (S155) and S172 residues precludes mitochondrial fission promoted by AMP-activated protein kinase (AMPK) [121], a well-known intracellular energy sensor that phosphorylates multiple downstream effectors participating in cellular homeostasis [122]. These serine residues are located between the DRP1-interacting region at the N-terminus and the C-terminal mitochondrial TM domain. Additionally, S129 and S146 have been also identified as AMPK targets in hepatocytes using proteomics [123]. Interestingly, similar to MFN2, MFF has been identified as a PARK2 target for ubiquitination. Four glycine residues (G28, G88, G251, and G264) were identified within four different ubiquitin-interacting motifs [124]. Eliminating PARK2 was not sufficient to preclude MFF ubiquitination, suggesting that other proteins may play a role in MFF proteostasis [125]. MFF only contains one cysteine residue (human C209), which is located after the DRP1-interacting region but before the TM domain (Figure 3E). This residue is not conserved as it is absent in G. gallus (complete alignment in Supplementary Materials). In line with this, an unbiased proteomic approach, where cysteine reactivity within mitochondrial proteins was monitored by labelling cysteine-reactive residues with chemical probes followed by mass spectrometry, also failed to identify functional cysteine residues in MFF [126]. These data imply that the single and not fully conserved cysteine residue in MFF probably has no relevant function. 4.5. MID49/51 The MID49/51 proteins were first described in a large-scale analysis as mitochondrial proteins [127], and later redefined as novel elements of the mitochondrial fission protein group. The overexpression of MID49/51 proteins sequestered DRP1 from mitochondria and triggered an elongated mitochondrial network whereas abolishing their expression caused a fragmented mitochondrial pattern [65]. MID51 contains 463 amino acids while MID49 is slightly smaller with 454 amino acids (Figure 3F,G). MID49/51 are encoded by the mitochondrial elongation factor 1 (MIEF1) and MIEF2 genes, respectively [128]. Both proteins are located in the OMM, with most of the protein present in the cytosol to regulate DRP1-mediated mitochondrial fission. The highly conserved residues within the TMD, amino acids 26-47 of MID49, and 24-46 of MID51 are necessary for mitochondrial anchoring but are not required for interaction with DRP1 [129]. Following the TMD, an N-terminal disordered region with an absent secondary structure has been described in the crystal structure of these proteins [130]. Both proteins contain nucleotidyl transferase (NT) domains without enzymatic activity but a still preserved ADP-binding capacity for MID51 (Figure 3F,G) [130,131]. Although DRP1 recruitment by MID51 is ADP independent, ADP binding to MID51 facilitates its dimerization, which in turn stimulates DRP1 oligomerization [131]. MID49/51 also share similar α-helices and β-strands at the N-terminal position, which precedes a linker before the C-terminal containing five α helices [130]. Although both proteins share α-helices and β-sheets from the N- to C-terminus, their oligomerization domains are different [131]. While MID51 appears to be dimeric, MID49 adopts a monomeric structure. It has been proposed that MID49 weakly dimerizes and that this was not apparent in the crystal structure due to technical issues [130]. MID49/51 proteins contain DRP1 recruitment sites [132,133] and their interaction with DRP1 is independent of MFF or FIS1 [134]. The interaction of DRP1 with MID51 is GTP dependent and MID51 dimerization is necessary for mitochondrial morphology control [135]. Indeed, these differences between both MID49/51 proteins could explain different roles in mitochondrial fission. MID49/51 proteins were not found in a proteomic screen searching for conserved functional cysteines in pure mitochondrial fractions [126]. However, MID51 can dimerize under non-reducing conditions [136]. This dimerization can be abolished by the mutation of C452 [136]. Five additional conserved cysteines distributed through the NT domain, DRP1 recruitment site, and the C-terminus Cells 2020, 9, 815 10 of 18 were identified within MID51 (Figure 3F and complete alignment in Supplementary Materials), but no function has been defined for these until now. MID49 contains two conserved cysteine residues located within the DRP1 recruitment domain and another one close to the C-terminus (Figure 3G), which also do not have any demonstrated function so far. 4.6. GDAP1 GDAP1 [137] is a 41.5 kDa protein, which causes the hereditary polyneuropathy Charcot–Marie– Tooth disease 4A when mutated on both alleles [138,139]. It is anchored in the outer mitochondrial and peroxisomal membranes and mainly expressed in neurons and less in Schwann cells [140,141]. Overexpression of GDAP1 causes a more fragmented mitochondrial shape while its knockdown results in more elongated mitochondria [140]. This fission-like activity can be counterbalanced by fusion-promoting factors like mitofusins or dominant-negative DRP1 [140]. GDAP1 is anchored in the OMM with a C-terminal transmembrane domain (TMD) and faces the cytosol (Figure 3H). It has two cytosolic domains that share similarities to glutathione-S-transferases (GSTs; Figure 3H) [140]. The C-terminal hydrophobic domain (HD) of GDAP1 presumably resides in the cytosol. Truncated GDAP1 lacking the TMD has no GST-like activity [141,142], but recently, a theta-class-like GST activity was described for GDAP1. Huber et al. proposed a model where the HD domain of GDAP1 is able to regulate the GST activity of the protein. In an inactive state, the HD domain blocks the GST activity while in the active state, the amphipathic pattern of HD would trigger membrane curvature and mitochondrial fission [68]. In this model, dominant GDAP1 mutations, which cause a hereditary polyneuropathy, would adopt a super-active conformation resulting in toxic hyper-fission activity while recessive GDAP1 mutations with reduced fission activity would adopt the inactive state [68]. Furthermore, Noack et al. observed an increase of GSH in response to overexpression of wildtype but not mutant GDAP1 [143]. In line with this, Drosophila melanogaster studies demonstrated that not only overexpression of GDAP1 wildtype but also knockdown results in both a higher GSH concentration and higher GSH to GSSG ratio in fly thoraxes [144]. Additional studies are required to confirm the Drosophila observations since muscle tissue is different from neurons, where GDAP1 seems to be more important. Structurally, Drosophila GDAP1 shares similarities with the human GDAP1 protein, especially in respect to the GST domains. In fact, human GDAP1 overexpression was able to rescue the alterations caused by Gdap1 interference in flies [144]. This reinforces the functional similarity between the species. Niemann et al. described a disturbed GSH/GSSG balance towards increased oxidized glutathione in a mouse model with a deletion of exon 5 in the Gdap1 gene, leading to a truncated protein that lacks the TMD anchoring in the OMM [145]. These mice developed a mild hypomyelinating peripheral neuropathy, and most importantly, the lack of phenotype in the central nervous system was attributed to a compensatory function mediated by the paralogue GDAP1L1 [145], which shares a 70% sequence similarity with GDAP1 [142], including the GST domains and the C-terminal transmembrane domain [146]. GDAP1L1 expression is restricted to the brain and testes (www.proteinatlas.org) and, in contrast to GDAP1, resides in the cytosol under basal conditions but translocates to mitochondria upon increased levels of oxidized glutathione, where it is also able to induce mitochondrial fission [145]. Although all four cysteines in the human GDAP1 protein (respectively five in GDAP1L1) are only conserved in vertebrates but not in Drosophila melanogaster (Figure 3H and complete alignment in Supplementary Materials), potential cysteine modifications and their impact on GDAP1 function warrant further investigation. No pathogenic mutations are associated with GDAP1L1. However, its ability to translocate from the cytosol to mitochondria under altered redox conditions suggests a possible role in cellular homeostasis through redox-mediated modifications. 5. Conclusions Our analysis suggests that the evolutionarily oldest proteins of the mitochondrial fusion and fission machinery, the mitofusins and DRP1 but not FIS1, are subject to redox modifications functionally relevant for mitochondrial dynamics and potentially also for mitochondrial quality control. The lack of Cells 2020, 9, 815 11 of 18 evolutionary conservation rendered the analysis of other proteins relevant for mitochondrial dynamics more difficult. Overall, however, conserved cysteine residues are present in almost all the proteins of the mitochondrial fission/fusion machinery, offering new avenues for future investigation. Supplementary Materials: The following are available online at http://www.mdpi.com/2073-4409/9/4/815/s1, Protein alignments performed with CLUSTAL O (1.2.4). Author Contributions: Conceptualization, A.M.; methodology, D.B.; writing—original draft preparation, C.W., V.L.d.A., S.A., D.B., S.T., E.-M.H., C.B.; writing—review and editing, A.M.; visualization, D.B., V.L.d.A.; supervision, A.M. All authors have read and agreed to the published version of the manuscript. Funding: This research was funded by the Deutsche Forschungsgemeinschaft grant numbers TE599/5-1, HA8334/2-2, BE3259/5-2, and ME1922/16-1 within the priority program SPP 1710 “Dynamics of thiol-based redox switches in cellular physiology”. Conflicts of Interest: The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, or in the decision to publish the results. References 1. Miseta, A.; Csutora, P. Relationship between the occurrence of cysteine in proteins and the complexity of organisms. Mol. Biol. Evol. 2000, 17, 1232–1239. [CrossRef] [PubMed] 2. Go, Y.-M.; Chandler, J.D.; Jones, D.P. The cysteine proteome. Free Radic. Biol. Med. 2015, 84, 227–245. [CrossRef] [PubMed] 3. Gan, Z.R.; Wells, W.W. Identification and reactivity of the catalytic site of pig liver thioltransferase. J. Biol. Chem. 1987, 262, 6704–6707. [PubMed] 4. Go, Y.-M.; Jones, D.P. The redox proteome. J. Biol. Chem. 2013, 288, 26512–26520. [CrossRef] 5. Leichert, L.I.; Dick, T.P. Incidence and physiological relevance of protein thiol switches. Biol. Chem. 2015, 396, 389–399. [CrossRef] [PubMed] 6. Groitl, B.; Jakob, U. Thiol-based redox switches. Biochim. Biophys. Acta 2014, 1844, 1335–1343. [CrossRef] 7. Poole, L.B.; Karplus, P.A.; Claiborne, A. Protein sulfenic acids in redox signaling. Annu. Rev. Pharmacol. Toxicol. 2004, 44, 325–347. [CrossRef] 8. Fucci, L.; Oliver, C.N.; Coon, M.J.; Stadtman, E.R. Inactivation of key metabolic enzymes by mixed-function oxidation reactions: Possible implication in protein turnover and ageing. Proc. Natl. Acad. Sci. USA 1983, 80, 1521–1525. [CrossRef] 9. Abe, K.; Kimura, H. The possible role of hydrogen sulfide as an endogenous neuromodulator. J. Neurosci. 1996, 16, 1066–1071. [CrossRef] 10. Hosoki, R.; Matsuki, N.; Kimura, H. The possible role of hydrogen sulfide as an endogenous smooth muscle relaxant in synergy with nitric oxide. Biochem. Biophys. Res. Commun. 1997, 237, 527–531. [CrossRef] 11. Hildebrandt, T.M.; Grieshaber, M.K. Three enzymatic activities catalyze the oxidation of sulfide to thiosulfate in mammalian and invertebrate mitochondria. FEBS J 2008, 275, 3352–3361. [CrossRef] [PubMed] 12. Müller, F.H.; Bandeiras, T.M.; Urich, T.; Teixeira, M.; Gomes, C.M.; Kletzin, A. Coupling of the pathway of sulphur oxidation to dioxygen reduction: Characterization of a novel membrane-bound thiosulphate:quinone oxidoreductase. Mol. Microbiol. 2004, 53, 1147–1160. [CrossRef] [PubMed] 13. Vitvitsky, V.; Yadav, P.K.; Kurthen, A.; Banerjee, R. Sulfide oxidation by a noncanonical pathway in red blood cells generates thiosulfate and polysulfides. J. Biol. Chem. 2015, 290, 8310–8320. [CrossRef] [PubMed] 14. Kabil, O.; Banerjee, R. Redox biochemistry of hydrogen sulfide. J. Biol. Chem. 2010, 285, 21903–21907. [CrossRef] 15. Dóka, É.; Ida, T.; Dagnell, M.; Abiko, Y.; Luong, N.C.; Balog, N.; Takata, T.; Espinosa, B.; Nishimura, A.; Cheng, Q.; et al. Control of protein function through oxidation and reduction of persulfidated states. Sci. Adv. 2020, 6, eaax8358. [CrossRef] 16. Krishnan, N.; Fu, C.; Pappin, D.J.; Tonks, N.K. H2S-Induced sulfhydration of the phosphatase PTP1B and its role in the endoplasmic reticulum stress response. Sci. Signal. 2011, 4, ra86. [CrossRef] 17. Sen, N.; Paul, B.D.; Gadalla, M.M.; Mustafa, A.K.; Sen, T.; Xu, R.; Kim, S.; Snyder, S.H. Hydrogen sulfide-linked sulfhydration of NF-κB mediates its antiapoptotic actions. Mol. Cell 2012, 45, 13–24. [CrossRef] Cells 2020, 9, 815 12 of 18 18. Coletta, C.; Papapetropoulos, A.; Erdelyi, K.; Olah, G.; Módis, K.; Panopoulos, P.; Asimakopoulou, A.; Gerö, D.; Sharina, I.; Martin, E.; et al. Hydrogen sulfide and nitric oxide are mutually dependent in the regulation of angiogenesis and endothelium-dependent vasorelaxation. Proc. Natl. Acad. Sci. USA 2012, 109, 9161–9166. [CrossRef] 19. Eberhardt, M.; Dux, M.; Namer, B.; Miljkovic, J.; Cordasic, N.; Will, C.; Kichko, T.I.; de la Roche, J.; Fischer, M.; Suárez, S.A.; et al. H2S and NO cooperatively regulate vascular tone by activating a neuroendocrine HNO-TRPA1-CGRP signalling pathway. Nat. Commun. 2014, 5, 4381. [CrossRef] 20. King, A.L.; Polhemus, D.J.; Bhushan, S.; Otsuka, H.; Kondo, K.; Nicholson, C.K.; Bradley, J.M.; Islam, K.N.; Calvert, J.W.; Tao, Y.-X.; et al. Hydrogen sulfide cytoprotective signaling is endothelial nitric oxide synthase-nitric oxide dependent. Proc. Natl. Acad. Sci. USA 2014, 111, 3182–3187. [CrossRef] 21. Mustafa, A.K.; Sikka, G.; Gazi, S.K.; Steppan, J.; Jung, S.M.; Bhunia, A.K.; Barodka, V.M.; Gazi, F.K.; Barrow, R.K.; Wang, R.; et al. Hydrogen sulfide as endothelium-derived hyperpolarizing factor sulfhydrates potassium channels. Circ. Res. 2011, 109, 1259–1268. [CrossRef] [PubMed] 22. Broniowska, K.A.; Keszler, A.; Basu, S.; Kim-Shapiro, D.B.; Hogg, N. Cytochrome c-mediated formation of S-nitrosothiol in cells. Biochem. J. 2012, 442, 191–197. [CrossRef] [PubMed] 23. Olson, N.; Kasahara, D.I.; Hristova, M.; Bernstein, R.; Janssen-Heininger, Y.; van der Vliet, A. Modulation of NF-κB and hypoxia-inducible factor–1 by S-nitrosoglutathione does not alter allergic airway inflammation in mice. Am. J. Respir. Cell Mol. Biol. 2011, 44, 813–823. [CrossRef] [PubMed] 24. Hara, M.R.; Agrawal, N.; Kim, S.F.; Cascio, M.B.; Fujimuro, M.; Ozeki, Y.; Takahashi, M.; Cheah, J.H.; Tankou, S.K.; Hester, L.D.; et al. S-nitrosylated GAPDH initiates apoptotic cell death by nuclear translocation following Siah1 binding. Nat. Cell Biol. 2005, 7, 665–674. [CrossRef] 25. Chang, A.H.K.; Sancheti, H.; Garcia, J.; Kaplowitz, N.; Cadenas, E.; Han, D. Respiratory substrates regulate S-nitrosylation of mitochondrial proteins through a thiol-dependent pathway. Chem. Res. Toxicol. 2014, 27, 794–804. [CrossRef] 26. Piantadosi, C.A. Regulation of mitochondrial processes by protein S-nitrosylation. Biochim. Biophys. Acta 2012, 1820, 712–721. [CrossRef] 27. Doulias, P.-T.; Tenopoulou, M.; Greene, J.L.; Raju, K.; Ischiropoulos, H. Nitric oxide regulates mitochondrial fatty acid metabolism through reversible protein S-nitrosylation. Sci. Signal. 2013, 6, rs1. [CrossRef] 28. Bartesaghi, S.; Radi, R. Fundamentals on the biochemistry of peroxynitrite and protein tyrosine nitration. Redox Biol. 2018, 14, 618–625. [CrossRef] 29. Zhang, L.; Chen, C.-L.; Kang, P.T.; Garg, V.; Hu, K.; Green-Church, K.B.; Chen, Y.-R. Peroxynitrite-mediated oxidative modifications of complex II: Relevance in myocardial infarction. Biochemistry 2010, 49, 2529–2539. [CrossRef] 30. Kang, P.T.; Zhang, L.; Chen, C.-L.; Chen, J.; Green, K.B.; Chen, Y.-R. Protein thiyl radical mediates S-glutathionylation of complex I. Free Radic. Biol. Med. 2012, 53, 962–973. [CrossRef] 31. Sykes, M.C.; Mowbray, A.L.; Jo, H. Reversible Glutathiolation of Caspase-3 by Glutaredoxin as a Novel Redox Signaling Mechanism in Tumor Necrosis Factor-α–Induced Cell Death. Circ. Res. 2007, 100, 152–154. [CrossRef] 32. Klatt, P.; Lamas, S. Regulation of protein function by S-glutathiolation in response to oxidative and nitrosative stress. Eur. J. Biochem. 2000, 267, 4928–4944. [CrossRef] [PubMed] 33. Pastore, A.; Piemonte, F. S-Glutathionylation signaling in cell biology: Progress and prospects. Eur. J. Pharm. Sci. 2012, 46, 279–292. [CrossRef] [PubMed] 34. Beer, S.M.; Taylor, E.R.; Brown, S.E.; Dahm, C.C.; Costa, N.J.; Runswick, M.J.; Murphy, M.P. Glutaredoxin 2 catalyzes the reversible oxidation and glutathionylation of mitochondrial membrane thiol proteins: Implications for mitochondrial redox regulation and antioxidant DEFENSE. J. Biol. Chem. 2004, 279, 47939–47951. [CrossRef] [PubMed] 35. Sies, H.; Berndt, C.; Jones, D.P. Oxidative Stress. Annu. Rev. Biochem. 2017, 86, 715–748. [CrossRef] 36. Hanschmann, E.-M.; Godoy, J.R.; Berndt, C.; Hudemann, C.; Lillig, C.H. Thioredoxins, glutaredoxins, and peroxiredoxins–molecular mechanisms and health significance: From cofactors to antioxidants to redox signaling. Antioxid. Redox Signal. 2013, 19, 1539–1605. [CrossRef] 37. Berndt, C.; Lillig, C.H.; Flohé, L. Redox regulation by glutathione needs enzymes. Front. Pharmacol. 2014, 5, 168. [CrossRef] Cells 2020, 9, 815 13 of 18 38. Sengupta, R.; Holmgren, A. Thioredoxin and thioredoxin reductase in relation to reversible S-nitrosylation. Antioxid. Redox Signal. 2013, 18, 259–269. [CrossRef] 39. Dóka, É.; Pader, I.; Bíró, A.; Johansson, K.; Cheng, Q.; Ballagó, K.; Prigge, J.R.; Pastor-Flores, D.; Dick, T.P.; Schmidt, E.E.; et al. A novel persulfide detection method reveals protein persulfide- and polysulfide-reducing functions of thioredoxin and glutathione systems. Sci. Adv. 2016, 2, e1500968. [CrossRef] 40. Lillig, C.H.; Berndt, C. Glutaredoxins in thiol/disulfide exchange. Antioxid. Redox Signal. 2013, 18, 1654–1665. [CrossRef] 41. Chang, T.-S.; Jeong, W.; Woo, H.A.; Lee, S.M.; Park, S.; Rhee, S.G. Characterization of Mammalian Sulfiredoxin and Its Reactivation of Hyperoxidized Peroxiredoxin through Reduction of Cysteine Sulfinic Acid in the Active Site to Cysteine. J. Biol. Chem. 2004, 279, 50994–51001. [CrossRef] [PubMed] 42. Biteau, B.; Labarre, J.; Toledano, M.B. ATP-dependent reduction of cysteine-sulphinic acid by S. cerevisiae sulphiredoxin. Nature 2003, 425, 980–984. [CrossRef] [PubMed] 43. Akter, S.; Fu, L.; Jung, Y.; Conte, M.L.; Lawson, J.R.; Lowther, W.T.; Sun, R.; Liu, K.; Yang, J.; Carroll, K.S. Chemical proteomics reveals new targets of cysteine sulfinic acid reductase. Nat. Chem. Biol. 2018, 14, 995–1004. [CrossRef] [PubMed] 44. Winterbourn, C.C.; Hampton, M.B. Redox biology: Signaling via a peroxiredoxin sensor. Nat. Chem. Biol. 2015, 11, 5–6. [CrossRef] 45. Stöcker, S.; Maurer, M.; Ruppert, T.; Dick, T.P. A role for 2-Cys peroxiredoxins in facilitating cytosolic protein thiol oxidation. Nat. Chem. Biol. 2018, 14, 148–155. [CrossRef] 46. Soares Moretti, A.I.; Martins Laurindo, F.R. Protein disulfide isomerases: Redox connections in and out of the endoplasmic reticulum. Arch. Biochem. Biophys. 2017, 617, 106–119. [CrossRef] 47. Tian, C.; Alomar, F.; Moore, C.J.; Shao, C.H.; Kutty, S.; Singh, J.; Bidasee, K.R. Reactive carbonyl species and their roles in sarcoplasmic reticulum Ca2+ cycling defect in the diabetic heart. Heart Fail. Rev. 2014, 19, 101–112. [CrossRef] 48. Watanabe, Y.; Cohen, R.A.; Matsui, R. Redox Regulation of Ischemic Angiogenesis Another Aspect of Reactive Oxygen Species. Circ. J. 2016, 80, 1278–1284. [CrossRef] 49. Venditti, P.; Di Stefano, L.; Di Meo, S. Mitochondrial metabolism of reactive oxygen species. Mitochondrion 2013, 13, 71–82. [CrossRef] 50. Hamanaka, R.B.; Chandel, N.S. Mitochondrial reactive oxygen species regulate cellular signaling and dictate biological outcomes. Trends Biochem. Sci. 2010, 35, 505–513. [CrossRef] 51. Kussmaul, L.; Hirst, J. The mechanism of superoxide production by NADH:ubiquinone oxidoreductase (complex I) from bovine heart mitochondria. Proc. Natl. Acad. Sci. USA 2006, 103, 7607–7612. [CrossRef] [PubMed] 52. Pryde, K.R.; Hirst, J. Superoxide is produced by the reduced flavin in mitochondrial complex I: A single, unified mechanism that applies during both forward and reverse electron transfer. J. Biol. Chem. 2011, 286, 18056–18065. [CrossRef] [PubMed] 53. Kudin, A.P.; Bimpong-Buta, N.Y.-B.; Vielhaber, S.; Elger, C.E.; Kunz, W.S. Characterization of superoxide-producing sites in isolated brain mitochondria. J. Biol. Chem. 2004, 279, 4127–4135. [CrossRef] 54. Votyakova, T.V.; Reynolds, I.J. DeltaPsi(m)-Dependent and -independent production of reactive oxygen species by rat brain mitochondria. J. Neurochem. 2001, 79, 266–277. [CrossRef] [PubMed] 55. Liu, Y.; Fiskum, G.; Schubert, D. Generation of reactive oxygen species by the mitochondrial electron transport chain. J. Neurochem. 2002, 80, 780–787. [CrossRef] [PubMed] 56. Chouchani, E.T.; Methner, C.; Nadtochiy, S.M.; Logan, A.; Pell, V.R.; Ding, S.; James, A.M.; Cochemé, H.M.; Reinhold, J.; Lilley, K.S.; et al. Cardioprotection by S-nitrosation of a cysteine switch on mitochondrial complex I. Nat. Med. 2013, 19, 753–759. [CrossRef] [PubMed] 57. Bleier, L.; Wittig, I.; Heide, H.; Steger, M.; Brandt, U.; Dröse, S. Generator-specific targets of mitochondrial reactive oxygen species. Free Radic. Biol. Med. 2015, 78, 1–10. [CrossRef] 58. Turrens, J.F.; Alexandre, A.; Lehninger, A.L. Ubisemiquinone is the electron donor for superoxide formation by complex III of heart mitochondria. Arch. Biochem. Biophys. 1985, 237, 408–414. [CrossRef] 59. Muller, F.L.; Liu, Y.; Van Remmen, H. Complex III releases superoxide to both sides of the inner mitochondrial membrane. J. Biol. Chem. 2004, 279, 49064–49073. [CrossRef] 60. Han, D.; Antunes, F.; Canali, R.; Rettori, D.; Cadenas, E. Voltage-dependent anion channels control the release of the superoxide anion from mitochondria to cytosol. J. Biol. Chem. 2003, 278, 5557–5563. [CrossRef] Cells 2020, 9, 815 14 of 18 61. Lillig, C.H.; Berndt, C.; Holmgren, A. Glutaredoxin systems. Biochim. Biophys. Acta 2008, 1780, 1304–1317. [CrossRef] [PubMed] 62. Pai, H.V.; Starke, D.W.; Lesnefsky, E.J.; Hoppel, C.L.; Mieyal, J.J. What is the functional significance of the unique location of glutaredoxin 1 (GRx1) in the intermembrane space of mitochondria? Antioxid. Redox Signal. 2007, 9, 2027–2033. [CrossRef] [PubMed] 63. Mishra, P.; Chan, D.C. Mitochondrial dynamics and inheritance during cell division, development and disease. Nat. Rev. Mol. Cell Biol. 2014, 15, 634–646. [CrossRef] [PubMed] 64. Song, Z.; Chen, H.; Fiket, M.; Alexander, C.; Chan, D.C. OPA1 processing controls mitochondrial fusion and is regulated by mRNA splicing, membrane potential, and Yme1L. J. Cell Biol. 2007, 178, 749–755. [CrossRef] [PubMed] 65. Palmer, C.S.; Osellame, L.D.; Laine, D.; Koutsopoulos, O.S.; Frazier, A.E.; Ryan, M.T. MiD49 and MiD51, new components of the mitochondrial fission machinery. EMBO Rep. 2011, 12, 565–573. [CrossRef] [PubMed] 66. Zhang, Z.; Liu, L.; Wu, S.; Xing, D. Drp1, Mff, Fis1, and MiD51 are coordinated to mediate mitochondrial fission during UV irradiation-induced apoptosis. FASEB J. 2016, 30, 466–476. [CrossRef] 67. Niemann, A.; Wagner, K.M.; Ruegg, M.; Suter, U. GDAP1 mutations differ in their effects on mitochondrial dynamics and apoptosis depending on the mode of inheritance. Neurobiol. Dis. 2009, 36, 509–520. [CrossRef] 68. Huber, N.; Bieniossek, C.; Wagner, K.M.; Elsässer, H.-P.; Suter, U.; Berger, I.; Niemann, A. Glutathione-conjugating and membrane-remodeling activity of GDAP1 relies on amphipathic C-terminal domain. Sci. Rep. 2016, 6, 36930. [CrossRef] 69. González-Sánchez, P.; Pla-Martín, D.; Martínez-Valero, P.; Rueda, C.B.; Calpena, E.; del Arco, A.; Palau, F.; Satrústegui, J. CMT-linked loss-of-function mutations in GDAP1 impair store-operated Ca2+ entry-stimulated respiration. Sci. Rep. 2017, 7, 42993. [CrossRef] 70. Kawalec, M.; Zabłocka, B.; Kabzińska, D.; Neska, J.; Beręsewicz, M. Mitofusin 2 expression dominates over mitofusin 1 exclusively in mouse dorsal root ganglia—A possible explanation for peripheral nervous system involvement in Charcot-Marie-Tooth 2A. Folia Neuropathol. 2014, 52, 436–442. [CrossRef] 71. Detmer, S.A.; Chan, D.C. Complementation between mouse Mfn1 and Mfn2 protects mitochondrial fusion defects caused by CMT2A disease mutations. J. Cell Biol. 2007, 176, 405–414. [CrossRef] [PubMed] 72. Li, Y.-J.; Cao, Y.-L.; Feng, J.-X.; Qi, Y.; Meng, S.; Yang, J.-F.; Zhong, Y.-T.; Kang, S.; Chen, X.; Lan, L.; et al. Structural insights of human mitofusin-2 into mitochondrial fusion and CMT2A onset. Nat. Commun. 2019, 10, 4914. [CrossRef] [PubMed] 73. Pyakurel, A.; Savoia, C.; Hess, D.; Scorrano, L. Extracellular regulated kinase phosphorylates mitofusin 1 to control mitochondrial morphology and apoptosis. Mol. Cell 2015, 58, 244–254. [CrossRef] [PubMed] 74. Chen, H.; Detmer, S.A.; Ewald, A.J.; Griffin, E.E.; Fraser, S.E.; Chan, D.C. Mitofusins Mfn1 and Mfn2 coordinately regulate mitochondrial fusion and are essential for embryonic development. J. Cell Biol. 2003, 160, 189–200. [CrossRef] [PubMed] 75. Schrepfer, E.; Scorrano, L. Mitofusins, from Mitochondria to Metabolism. Mol. Cell 2016, 61, 683–694. [CrossRef] [PubMed] 76. Koshiba, T.; Detmer, S.A.; Kaiser, J.T.; Chen, H.; McCaffery, J.M.; Chan, D.C. Structural basis of mitochondrial tethering by mitofusin complexes. Science 2004, 305, 858–862. [CrossRef] 77. Mattie, S.; Riemer, J.; Wideman, J.G.; McBride, H.M. A new mitofusin topology places the redox-regulated C terminus in the mitochondrial intermembrane space. J. Cell Biol. 2018, 217, 507–515. [CrossRef] 78. Narendra, D.; Tanaka, A.; Suen, D.-F.; Youle, R.J. Parkin is recruited selectively to impaired mitochondria and promotes their autophagy. J. Cell Biol. 2008, 183, 795–803. [CrossRef] 79. Gegg, M.E.; Cooper, J.M.; Chau, K.-Y.; Rojo, M.; Schapira, A.H.V.; Taanman, J.-W. Mitofusin 1 and mitofusin 2 are ubiquitinated in a PINK1/parkin-dependent manner upon induction of mitophagy. Hum. Mol. Genet. 2010, 19, 4861–4870. [CrossRef] 80. Chen, Y.; Dorn, G.W. PINK1-phosphorylated mitofusin 2 is a Parkin receptor for culling damaged mitochondria. Science 2013, 340, 471–475. [CrossRef] 81. Mukherjee, R.; Chakrabarti, O. Regulation of Mitofusin1 by Mahogunin Ring Finger-1 and the proteasome modulates mitochondrial fusion. Biochim. Biophys. Acta 2016, 1863, 3065–3083. [CrossRef] [PubMed] 82. Wang, P.T.C.; Garcin, P.O.; Fu, M.; Masoudi, M.; St-Pierre, P.; Panté, N.; Nabi, I.R. Distinct mechanisms controlling rough and smooth endoplasmic reticulum contacts with mitochondria. J. Cell Sci. 2015, 128, 2759–2765. [CrossRef] [PubMed] Cells 2020, 9, 815 15 of 18 83. Fu, M.; St-Pierre, P.; Shankar, J.; Wang, P.T.C.; Joshi, B.; Nabi, I.R. Regulation of mitophagy by the Gp78 E3 ubiquitin ligase. Mol. Biol. Cell 2013, 24, 1153–1162. [CrossRef] [PubMed] 84. Barsoum, M.J.; Yuan, H.; Gerencser, A.A.; Liot, G.; Kushnareva, Y.; Gräber, S.; Kovacs, I.; Lee, W.D.; Waggoner, J.; Cui, J.; et al. Nitric oxide-induced mitochondrial fission is regulated by dynamin-related GTPases in neurons. EMBO J. 2006, 25, 3900–3911. [CrossRef] [PubMed] 85. Shutt, T.; Geoffrion, M.; Milne, R.; McBride, H.M. The intracellular redox state is a core determinant of mitochondrial fusion. EMBO Rep. 2012, 13, 909–915. [CrossRef] [PubMed] 86. Thaher, O.; Wolf, C.; Dey, P.N.; Pouya, A.; Wüllner, V.; Tenzer, S.; Methner, A. The thiol switch C684 in Mitofusin-2 mediates redox-induced alterations of mitochondrial shape and respiration. Neurochem. Int. 2018, 117, 167–173. [CrossRef] 87. Bleazard, W.; McCaffery, J.M.; King, E.J.; Bale, S.; Mozdy, A.; Tieu, Q.; Nunnari, J.; Shaw, J.M. The dynamin-related GTPase Dnm1 regulates mitochondrial fission in yeast. Nat. Cell Biol. 1999, 1, 298–304. [CrossRef] 88. Smirnova, E.; Griparic, L.; Shurland, D.L.; van der Bliek, A.M. Dynamin-related protein Drp1 is required for mitochondrial division in mammalian cells. Mol. Biol. Cell 2001, 12, 2245–2256. [CrossRef] 89. Reddy, P.H.; Reddy, T.P.; Manczak, M.; Calkins, M.J.; Shirendeb, U.; Mao, P. Dynamin-related protein 1 and mitochondrial fragmentation in neurodegenerative diseases. Brain Res. Rev. 2011, 67, 103–118. [CrossRef] 90. Oliver, D.; Reddy, P.H. Dynamics of Dynamin-Related Protein 1 in Alzheimer’s Disease and Other Neurodegenerative Diseases. Cells 2019, 8, 961. [CrossRef] 91. Shin, H.W.; Shinotsuka, C.; Torii, S.; Murakami, K.; Nakayama, K. Identification and subcellular localization of a novel mammalian dynamin-related protein homologous to yeast Vps1p and Dnm1p. J. Biochem. 1997, 122, 525–530. [CrossRef] [PubMed] 92. Imoto, M.; Tachibana, I.; Urrutia, R. Identification and functional characterization of a novel human protein highly related to the yeast dynamin-like GTPase Vps1p. J. Cell Sci. 1998, 111, 1341–1349. [PubMed] 93. Yoon, Y.; Pitts, K.R.; Dahan, S.; McNiven, M.A. A novel dynamin-like protein associates with cytoplasmic vesicles and tubules of the endoplasmic reticulum in mammalian cells. J. Cell Biol. 1998, 140, 779–793. [CrossRef] [PubMed] 94. Chang, C.-R.; Manlandro, C.M.; Arnoult, D.; Stadler, J.; Posey, A.E.; Hill, R.B.; Blackstone, C. A lethal de novo mutation in the middle domain of the dynamin-related GTPase Drp1 impairs higher order assembly and mitochondrial division. J. Biol. Chem. 2010, 285, 32494–32503. [CrossRef] 95. Ingerman, E.; Perkins, E.M.; Marino, M.; Mears, J.A.; McCaffery, J.M.; Hinshaw, J.E.; Nunnari, J. Dnm1 forms spirals that are structurally tailored to fit mitochondria. J. Cell Biol. 2005, 170, 1021–1027. [CrossRef] 96. Michalska, B.M.; Kwapiszewska, K.; Szczepanowska, J.; Kalwarczyk, T.; Patalas-Krawczyk, P.; Szczepański, K.; Hołyst, R.; Duszynski, J.; Szymański, J. Insight into the fission mechanism by quantitative characterization of Drp1 protein distribution in the living cell. Sci. Rep. 2018, 8, 8122. [CrossRef] 97. Kwapiszewska, K.; Kalwarczyk, T.; Michalska, B.; Szczepański, K.; Szymański, J.; Patalas-Krawczyk, P.; Andryszewski, T.; Iwan, M.; Duszynski, J.; Hołyst, R. Determination of oligomerization state of Drp1 protein in living cells at nanomolar concentrations. Sci. Rep. 2019, 9, 5906. [CrossRef] 98. Qi, Z.; Huang, Z.; Xie, F.; Chen, L. Dynamin-related protein 1: A critical protein in the pathogenesis of neural system dysfunctions and neurodegenerative diseases. J. Cell. Physiol. 2019, 234, 10032–10046. [CrossRef] 99. Cho, D.-H.; Nakamura, T.; Fang, J.; Cieplak, P.; Godzik, A.; Gu, Z.; Lipton, S.A. S-nitrosylation of Drp1 mediates beta-amyloid-related mitochondrial fission and neuronal injury. Science 2009, 324, 102–105. [CrossRef] 100. Bossy, B.; Petrilli, A.; Klinglmayr, E.; Chen, J.; Lütz-Meindl, U.; Knott, A.B.; Masliah, E.; Schwarzenbacher, R.; Bossy-Wetzel, E. S-Nitrosylation of DRP1 does not affect enzymatic activity and is not specific to Alzheimer’s disease. J. Alzheimers Dis. 2010, 20, S513–S526. [CrossRef] 101. Nakamura, T.; Lipton, S.A. Redox modulation by S-nitrosylation contributes to protein misfolding, mitochondrial dynamics, and neuronal synaptic damage in neurodegenerative diseases. Cell Death Differ. 2011, 18, 1478–1486. [CrossRef] [PubMed] 102. Qu, J.; Nakamura, T.; Holland, E.A.; McKercher, S.R.; Lipton, S.A. S-nitrosylation of Cdk5: Potential implications in amyloid-β-related neurotoxicity in Alzheimer disease. Prion 2012, 6, 364–370. [CrossRef] [PubMed] Cells 2020, 9, 815 16 of 18 103. Rizza, S.; Cardaci, S.; Montagna, C.; Di Giacomo, G.; De Zio, D.; Bordi, M.; Maiani, E.; Campello, S.; Borreca, A.; Puca, A.A.; et al. S-nitrosylation drives cell senescence and aging in mammals by controlling mitochondrial dynamics and mitophagy. Proc. Natl. Acad. Sci. USA 2018, 115, E3388–E3397. [CrossRef] [PubMed] 104. Kim, Y.-M.; Youn, S.-W.; Sudhahar, V.; Das, A.; Chandhri, R.; Cuervo Grajal, H.; Kweon, J.; Leanhart, S.; He, L.; Toth, P.T.; et al. Redox Regulation of Mitochondrial Fission Protein Drp1 by Protein Disulfide Isomerase Limits Endothelial Senescence. Cell Rep. 2018, 23, 3565–3578. [CrossRef] [PubMed] 105. Zhou, L.; Zhang, Q.; Zhang, P.; Sun, L.; Peng, C.; Yuan, Z.; Cheng, J. c-Abl-mediated Drp1 phosphorylation promotes oxidative stress-induced mitochondrial fragmentation and neuronal cell death. Cell Death Dis. 2017, 8, e3117. [CrossRef] [PubMed] 106. Lee, D.-S.; Kim, J.-E. PDI-mediated S-nitrosylation of DRP1 facilitates DRP1-S616 phosphorylation and mitochondrial fission in CA1 neurons. Cell Death Dis. 2018, 9, 869. [CrossRef] 107. Tsushima, K.; Bugger, H.; Wende, A.R.; Soto, J.; Jenson, G.A.; Tor, A.R.; McGlauflin, R.; Kenny, H.C.; Zhang, Y.; Souvenir, R.; et al. Mitochondrial Reactive Oxygen Species in Lipotoxic Hearts Induce Post-Translational Modifications of AKAP121, DRP1, and OPA1 That Promote Mitochondrial Fission. Circ. Res. 2018, 122, 58–73. [CrossRef] 108. Mozdy, A.D.; McCaffery, J.M.; Shaw, J.M. Dnm1p GTPase-mediated mitochondrial fission is a multi-step process requiring the novel integral membrane component Fis1p. J. Cell Biol. 2000, 151, 367–380. [CrossRef] 109. Otera, H.; Wang, C.; Cleland, M.M.; Setoguchi, K.; Yokota, S.; Youle, R.J.; Mihara, K. Mff is an essential factor for mitochondrial recruitment of Drp1 during mitochondrial fission in mammalian cells. J. Cell Biol. 2010, 191, 1141–1158. [CrossRef] 110. Losón, O.C.; Song, Z.; Chen, H.; Chan, D.C. Fis1, Mff, MiD49, and MiD51 mediate Drp1 recruitment in mitochondrial fission. Mol. Biol. Cell 2013, 24, 659–667. [CrossRef] 111. Jofuku, A.; Ishihara, N.; Mihara, K. Analysis of functional domains of rat mitochondrial Fis1, the mitochondrial fission-stimulating protein. Biochem. Biophys. Res. Commun. 2005, 333, 650–659. [CrossRef] [PubMed] 112. Dohm, J.A.; Lee, S.J.; Hardwick, J.M.; Hill, R.B.; Gittis, A.G. Cytosolic domain of the human mitochondrial fission protein fis1 adopts a TPR fold. Proteins 2004, 54, 153–156. [CrossRef] [PubMed] 113. Yu, T.; Fox, R.J.; Burwell, L.S.; Yoon, Y. Regulation of mitochondrial fission and apoptosis by the mitochondrial outer membrane protein hFis1. J. Cell Sci. 2005, 118, 4141–4151. [CrossRef] [PubMed] 114. Wells, R.C.; Picton, L.K.; Williams, S.C.P.; Tan, F.J.; Hill, R.B. Direct binding of the dynamin-like GTPase, Dnm1, to mitochondrial dynamics protein Fis1 is negatively regulated by the Fis1 N-terminal arm. J. Biol. Chem. 2007, 282, 33769–33775. [CrossRef] [PubMed] 115. Kumari, S.; Mehta, S.L.; Li, P.A. Glutamate induces mitochondrial dynamic imbalance and autophagy activation: Preventive effects of selenium. PLoS ONE 2012, 7, e39382. [CrossRef] [PubMed] 116. Zhang, Q.; Wu, J.; Wu, R.; Ma, J.; Du, G.; Jiao, R.; Tian, Y.; Zheng, Z.; Yuan, Z. DJ-1 promotes the proteasomal degradation of Fis1: Implications of DJ-1 in neuronal protection. Biochem. J. 2012, 447, 261–269. [CrossRef] 117. Liu, H.; Mao, P.; Wang, J.; Wang, T.; Xie, C.-H. Allicin Protects PC12 Cells Against 6-OHDA-Induced Oxidative Stress and Mitochondrial Dysfunction via Regulating Mitochondrial Dynamics. Cell. Physiol. Biochem. 2015, 36, 966–979. [CrossRef] 118. Tangmansakulchai, K.; Abubakar, Z.; Kitiyanant, N.; Suwanjang, W.; Leepiyasakulchai, C.; Govitrapong, P.; Chetsawang, B. Calpastatin overexpression reduces oxidative stress-induced mitochondrial impairment and cell death in human neuroblastoma SH-SY5Y cells by decreasing calpain and calcineurin activation, induction of mitochondrial fission and destruction of mitochondrial fusion. Mitochondrion 2016, 30, 151–161. 119. Gandre-Babbe, S.; van der Bliek, A.M. The novel tail-anchored membrane protein Mff controls mitochondrial and peroxisomal fission in mammalian cells. Mol. Biol. Cell 2008, 19, 2402–2412. [CrossRef] 120. Willems, P.H.G.M.; Rossignol, R.; Dieteren, C.E.J.; Murphy, M.P.; Koopman, W.J.H. Redox Homeostasis and Mitochondrial Dynamics. Cell Metab. 2015, 22, 207–218. [CrossRef] 121. Toyama, E.Q.; Herzig, S.; Courchet, J.; Lewis, T.L.; Losón, O.C.; Hellberg, K.; Young, N.P.; Chen, H.; Polleux, F.; Chan, D.C.; et al. AMP-activated protein kinase mediates mitochondrial fission in response to energy stress. Science 2016, 351, 275–281. [CrossRef] [PubMed] 122. Mihaylova, M.M.; Shaw, R.J. The AMPK signalling pathway coordinates cell growth, autophagy and metabolism. Nat. Cell Biol. 2011, 13, 1016–1023. [CrossRef] [PubMed] Cells 2020, 9, 815 17 of 18 123. Ducommun, S.; Deak, M.; Sumpton, D.; Ford, R.J.; Núñez Galindo, A.; Kussmann, M.; Viollet, B.; Steinberg, G.R.; Foretz, M.; Dayon, L.; et al. Motif affinity and mass spectrometry proteomic approach for the discovery of cellular AMPK targets: Identification of mitochondrial fission factor as a new AMPK substrate. Cell Signal. 2015, 27, 978–988. [CrossRef] [PubMed] 124. Sarraf, S.A.; Raman, M.; Guarani-Pereira, V.; Sowa, M.E.; Huttlin, E.L.; Gygi, S.P.; Harper, J.W. Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization. Nature 2013, 496, 372–376. [CrossRef] 125. Lee, L.; Seager, R.; Nakamura, Y.; Wilkinson, K.A.; Henley, J.M. Parkin-mediated ubiquitination contributes to the constitutive turnover of mitochondrial fission factor (Mff). PLoS ONE 2019, 14, e0213116. [CrossRef] 126. Bak, D.W.; Pizzagalli, M.D.; Weerapana, E. Identifying Functional Cysteine Residues in the Mitochondria. ACS Chem. Biol. 2017, 12, 947–957. [CrossRef] 127. Simpson, J.C.; Wellenreuther, R.; Poustka, A.; Pepperkok, R.; Wiemann, S. Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. EMBO Rep. 2000, 1, 287–292. [CrossRef] 128. Bartsakoulia, M.; Pyle, A.; Troncoso-Chandía, D.; Vial-Brizzi, J.; Paz-Fiblas, M.V.; Duff, J.; Griffin, H.; Boczonadi, V.; Lochmüller, H.; Kleinle, S.; et al. A novel mechanism causing imbalance of mitochondrial fusion and fission in human myopathies. Hum. Mol. Genet. 2018, 27, 1186–1195. [CrossRef] 129. Samangouei, P.; Crespo-Avilan, G.E.; Cabrera-Fuentes, H.; Hernández-Reséndiz, S.; Ismail, N.I.; Katwadi, K.B.; Boisvert, W.A.; Hausenloy, D.J. MiD49 and MiD51: New mediators of mitochondrial fission and novel targets for cardioprotection. Cond. Med. 2018, 1, 239–246. 130. Losón, O.C.; Meng, S.; Ngo, H.; Liu, R.; Kaiser, J.T.; Chan, D.C. Crystal structure and functional analysis of MiD49, a receptor for the mitochondrial fission protein Drp1. Protein Sci. 2015, 24, 386–394. [CrossRef] 131. Losón, O.C.; Liu, R.; Rome, M.E.; Meng, S.; Kaiser, J.T.; Shan, S.-O.; Chan, D.C. The mitochondrial fission receptor MiD51 requires ADP as a cofactor. Structure 2014, 22, 367–377. [CrossRef] 132. Richter, V.; Palmer, C.S.; Osellame, L.D.; Singh, A.P.; Elgass, K.; Stroud, D.A.; Sesaki, H.; Kvansakul, M.; Ryan, M.T. Structural and functional analysis of MiD51, a dynamin receptor required for mitochondrial fission. J. Cell Biol. 2014, 204, 477–486. [CrossRef] [PubMed] 133. Kalia, R.; Wang, R.Y.-R.; Yusuf, A.; Thomas, P.V.; Agard, D.A.; Shaw, J.M.; Frost, A. Structural basis of mitochondrial receptor binding and constriction by DRP1. Nature 2018, 558, 401–405. [CrossRef] [PubMed] 134. Palmer, C.S.; Elgass, K.D.; Parton, R.G.; Osellame, L.D.; Stojanovski, D.; Ryan, M.T. Adaptor proteins MiD49 and MiD51 can act independently of Mff and Fis1 in Drp1 recruitment and are specific for mitochondrial fission. J. Biol. Chem. 2013, 288, 27584–27593. [CrossRef] [PubMed] 135. Ma, J.; Zhai, Y.; Chen, M.; Zhang, K.; Chen, Q.; Pang, X.; Sun, F. New interfaces on MiD51 for Drp1 recruitment and regulation. PLoS ONE 2019, 14, e0211459. [CrossRef] 136. Zhao, J.; Liu, T.; Jin, S.; Wang, X.; Qu, M.; Uhlén, P.; Tomilin, N.; Shupliakov, O.; Lendahl, U.; Nistér, M. Human MIEF1 recruits Drp1 to mitochondrial outer membranes and promotes mitochondrial fusion rather than fission. EMBO J. 2011, 30, 2762–2778. [CrossRef] 137. Liu, H.; Nakagawa, T.; Kanematsu, T.; Uchida, T.; Tsuji, S. Isolation of 10 differentially expressed cDNAs in differentiated Neuro2a cells induced through controlled expression of the GD3 synthase gene. J. Neurochem. 1999, 72, 1781–1790. [CrossRef] 138. Baxter, R.V.; Ben Othmane, K.; Rochelle, J.M.; Stajich, J.E.; Hulette, C.; Dew-Knight, S.; Hentati, F.; Ben Hamida, M.; Bel, S.; Stenger, J.E.; et al. Ganglioside-induced differentiation-associated protein-1 is mutant in Charcot-Marie-Tooth disease type 4A/8q21. Nat. Genet. 2002, 30, 21–22. [CrossRef] 139. Cuesta, A.; Pedrola, L.; Sevilla, T.; García-Planells, J.; Chumillas, M.J.; Mayordomo, F.; LeGuern, E.; Marín, I.; Vílchez, J.J.; Palau, F. The gene encoding ganglioside-induced differentiation-associated protein 1 is mutated in axonal Charcot-Marie-Tooth type 4A disease. Nat. Genet. 2002, 30, 22–25. [CrossRef] 140. Niemann, A.; Ruegg, M.; La Padula, V.; Schenone, A.; Suter, U. Ganglioside-induced differentiation associated protein 1 is a regulator of the mitochondrial network: New implications for Charcot-Marie-Tooth disease. J. Cell Biol. 2005, 170, 1067–1078. [CrossRef] 141. Pedrola, L.; Espert, A.; Wu, X.; Claramunt, R.; Shy, M.E.; Palau, F. GDAP1, the protein causing Charcot-Marie-Tooth disease type 4A, is expressed in neurons and is associated with mitochondria. Hum. Mol. Genet. 2005, 14, 1087–1094. [CrossRef] [PubMed] Cells 2020, 9, 815 18 of 18 142. Shield, A.J.; Murray, T.P.; Board, P.G. Functional characterisation of ganglioside-induced differentiation-associated protein 1 as a glutathione transferase. Biochem. Biophys. Res. Commun. 2006, 347, 859–866. [CrossRef] 143. Noack, R.; Frede, S.; Albrecht, P.; Henke, N.; Pfeiffer, A.; Knoll, K.; Dehmel, T.; Meyer Zu Hörste, G.; Stettner, M.; Kieseier, B.C.; et al. Charcot-Marie-Tooth disease CMT4A: GDAP1 increases cellular glutathione and the mitochondrial membrane potential. Hum. Mol. Genet. 2012, 21, 150–162. [CrossRef] [PubMed] 144. López Del Amo, V.; Seco-Cervera, M.; García-Giménez, J.L.; Whitworth, A.J.; Pallardó, F.V.; Galindo, M.I. Mitochondrial defects and neuromuscular degeneration caused by altered expression of Drosophila Gdap1: Implications for the Charcot-Marie-Tooth neuropathy. Hum. Mol. Genet. 2015, 24, 21–36. [CrossRef] [PubMed] 145. Niemann, A.; Huber, N.; Wagner, K.M.; Somandin, C.; Horn, M.; Lebrun-Julien, F.; Angst, B.; Pereira, J.A.; Halfter, H.; Welzl, H.; et al. The Gdap1 knockout mouse mechanistically links redox control to Charcot-Marie-Tooth disease. Brain 2014, 137, 668–682. [CrossRef] [PubMed] 146. Marco, A.; Cuesta, A.; Pedrola, L.; Palau, F.; Marín, I. Evolutionary and structural analyses of GDAP1, involved in Charcot-Marie-Tooth disease, characterize a novel class of glutathione transferase-related genes. Mol. Biol. Evol. 2004, 21, 176–187. [CrossRef] [PubMed] © 2020 by the authors. Licensee MDPI, Basel, Switzerland. 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